Clear the Air: Practical methods for assessing and improving indoor air quality in animal shelters

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Updated:4/10/2025
Authors: Dr. Becky Stuntebeck, Dr. Denae Wagner
Categories:Infectious Disease, Lectures/Podcasts/Webinars, Shelter Population Management

Air quality is an important factor in the health and well-being of animals and people. If you’re struggling with offensive odors, excess humidity, or persistent respiratory disease problems, Drs. Becky Stuntebeck and Denae Wagner are here to help.

In this 2/19/2025 webinar and accompanying documents, Drs. Becky Stuntebeck and Denae Wagner provide comprehensive guidelines and strategies for selecting and using indoor air cleaning devices to improve indoor air quality (IAQ) in animal shelters.

Note: To receive a CE credit for watching the webinar, please view the video on Maddie’s® University (free, requires login).

Key Takeaways

Improving IAQ in Animal Shelters:

  • Fundamental Practices: Prioritize good sheltering practices, such as maintaining a well-functioning HVAC system, managing population density, and isolating sick animals. ​​
  • Ventilation: Ensure adequate ventilation with proper air exchanges (10-20 ACH for animal housing). ​​ Use CO2 levels as a marker for ventilation effectiveness. ​​
  • Humidity Control: Maintain humidity levels between 40-60% to optimize respiratory health and reduce airborne particles. ​​
  • Filtration: Use MERV 13 filters if compatible with the HVAC system to improve particulate removal. ​​​ HEPA filters are effective but may require frequent maintenance in high-load environments. ​
  • Portable Units: Consider portable air filtration units sized to the room, with low noise levels for comfort. ​​

Selecting Air Cleaning Devices:

  • Safety and Efficacy: Ensure devices meet independent standards for safety (e.g., California Air Resources Board [CARB] certification for low ozone emissions) and efficacy (e.g., Association of Home Appliance Manufacturers [AHAM] certification for Clean Air Delivery Rate [CADR]). ​
  • Regulatory Standards: CARB and EPA provide guidelines and recommendations for air cleaning devices, including UL 2998 standard for zero ozone emissions. ​
  • Types of Devices: Different technologies (filtration, photocatalytic oxidation, UV light) have varying mechanisms and target different particles. ​​ Avoid using ozone generators and electrostatic precipitators due to safety concerns. ​​

Air Cleaning Technologies:

  • UV Light: Effective for germicidal purposes but requires proper placement and safety measures to avoid direct exposure. ​​​
  • Photocatalytic Oxidation (PCO): Newer technology that does not produce ozone and can inactivate pathogens and break down VOCs and odors. ​​ Effective both in air and on surfaces. ​​

General Recommendations:

  • Source Control: Minimize pollutants at the source through good sanitation practices and avoiding overcrowding. ​​
  • Monitoring Tools: Use air quality meters to measure CO2, temperature, humidity, VOCs, and particulates to assess and improve IAQ.
  • Isolation Areas: Use air purifiers in isolation rooms to manage respiratory diseases. ​ Ensure proper ventilation and consider devices that also disinfect surfaces.
  • Humidity and Temperature: Maintain optimal levels to support animal comfort and health.
  • Maintenance: Regular maintenance of air cleaning devices is crucial for their effectiveness.

Air Quality (AQ) Q&A

Can you share more info/studies on cats not spreading URI via aerosols?

The studies are from the 70s and 80s. The two main ones that speak to the lack of aerosol transmission of feline respiratory pathogens are:

  1. Gaskell RM, Povey RC. Transmission of feline viral rhinotracheitis. 1982
  2. Wardley RC, Povey RC. Aerosol transmission of feline calciciviruses. An assessment of its epidemiological importance. 1977

Here are some relevant FAQs from our website.

  1. Managing feline respiratory disease in foster
  2. How can I decrease the spread of feline URI within my shelter?

Dr. Hurley got to meet one of the authors of those early papers, Roz Gaskell, who did a lot of foundational work on our understanding of feline respiratory disease transmission. Some of this work was in her PhD thesis, in addition to the studies referenced above. In her studies, Dr. Gaskell placed cats in open wire cages at least ~ 6 feet apart and made sure caretakers handled healthy/susceptible cats before the sick cats. There was no transmission even though they shared the same air space in a fairly small room. However, as soon as she reversed the order and allowed caregivers to handle the sick cats before the healthy/susceptible cats, there was transmission, showing the importance of fomite transmission for this disease. This is yet another reason why double compartment housing is so important, as it allows cleaning and basic care to take place without having to closely handle animals.

Would you recommend air purifiers in isolation rooms such as Upper Respiratory, Panleukopenia, Ringworm areas?

Assuming this question is focused on cats, remember that none of these diseases is transmitted through the air, so it probably isn’t necessary to specifically address airborne pathogens in cat housing spaces. However, there are ways that air purifiers can have value in these areas:

PCO ionizers show some value in disinfection of surfaces and so may help reduce fomite/environmental contamination and the associated risks of ongoing transmission.

Removing particles from the air can support respiratory tract health overall and make it easier for cats to fend off or recover from URI.

Should certain populations (i.e. ill, juvenile) have extra care for air quality (AQ)?

Optimizing AQ inside all areas within the shelter will provide health benefits for all animals and people, with particular value for those who are more at risk from diseases due to age or immune system compromise.

Even where airborne spread of pathogens is less of a risk (e.g. among cats) good AQ helps to support general respiratory tract health, which may help limit how many animals get sick or how severely sick they become.

Finally, don’t forget how important people are to the day to day work you are trying to do for the animals, and helping to reduce respiratory disease (infectious or not) can help ensure you have the staffing and volunteer levels you need to do your best work.

Dealing with pneumovirus and no isolation here nor input over cleaning. DVM here. Any suggestions?

Thinking about all canine respiratory disease pathogens broadly (pneumovirus management isn’t unique), anything moving about in the air is going to spread out (diffuse or become less concentrated) as distance from the source increases. If you don’t have a physically separate iso space but can create a makeshift iso space that’s functionally separate from gen pop by creating as much distance as possible (ideally at least 25ft) between sick animals & healthy animals, that can help. I hear you that you don’t have input over some facets of operations at your shelter but if you have some say over other things that are risk factors for canine infectious resp disease – crowding, stress levels, constant barking that worsens respiratory airway health- working on those will help too.

A full outbreak response with new intakes slowed or temporarily halted in order to establish a clean break may be necessary to fully disrupt ongoing transmission within your population. See the Outbreak Management section of our Canine Influenza info sheet.

What recommendations do you have if a shelter does not have a true isolation space with separate air exchange or is simply too full to isolate dogs with respiratory disease?

As noted in the previous question, distance can very much help reduce airborne disease transmission. However, getting ahead of respiratory disease and staying ahead is likely not possible without addressing the primary problems of crowding and capacity for care.

We are currently in the process of designing and building a new shelter, but we are having some trouble finding HVAC companies that are familiar with animal housing and air exchange. Does anyone happen to know of companies we could contact regarding that?

We don’t have specific companies to recommend, but there are a few approaches you could take.

An architectural firm that specializes in animal facilities can offer insights on many aspects, including HVAC systems. You could engage such a firm to advise the specific companies you hire to do the work. In this case you just need to make sure the company you hire for your build project is willing to work with the advising firm.

If this is not possible, some fundamentals you can share with the company you are hire are that:

  • Air conditioning and ventilation must support comfort and air quality at the level of people and at the level of animals within their housing units. How will the system work within the rooms and the housing units?
  • Isolation wards are the only area that warrant a separate exhaust system and the ward should be designed to be a negative pressure area relative to other areas to help insure that air moves into that space and not out of it. If air is getting recirculated in your HVAC system, air from these rooms would not get recirculated into the overall system and should be separately exhausted.
  • If you will have a surgery clinic onsite, the surgery suite should be be positively pressurized so that air passively is pushed out of this space rather than into it. Consider whether a higher rated filter for the air entering the surgery suite is indicated given the overall design of the HVAC system.
  • Ask about the filters that will be used on your HVAC system. HVAC systems that can work with MERV 13 filters will allow for better air quality within your shelter and reduce more of the smaller particulates from entering the facility – including pollens and smoke should you be in an area where these are problematic.
  • Ask about maintenance and make sure your team has the ability and resources to keep up with needs.
  • Do you want or need other tools to improve indoor air quality? Ensure units selected are safe and effective and understand maintenance needs and costs.
    • Are you interested in in-duct “disinfection” systems like UV purifiers?
    • Other air purifiers can be used without integration into the HVAC system if desired – such as Photocalytic Oxidizer (PCO) units and in-room air filter units – generally HEPA type filters. Are there areas where ventilation or overall comfort will be difficult to maintain by the overall HVAC and additional investment is warranted?
  • Understand the impact of open windows and doors on your HVAC system’s air flow – especially through animal housing spaces.
  • Finally, make sure that you can maintain whatever system you decide to go with– this often means finding or working with companies with local affiliations to ensure maintenance and repair can be done in a cost-effective and timely manner.
I see handheld UVC wands. Would you be able to wave those over certain parts of the cat room while cats are in there, like quick use, extra sanitation after cleaning once a week? Or if a room has all cats adopted could it be used before setting the room up again? Or do you have to hold it over the item for a long period of time? Is there any value to having staff use UV light sanitizers on themselves during cleaning to prevent fomite transmission? What about using these on animals that have infectious disease?

The devices that emit light into a space from a device like a wand are usually called “UV sanitizers” which are distinct from UV air purifiers. We didn’t specifically review the effectiveness of sanitizers, so I can’t say for sure, but the same principles Dr. Wagner noted would theoretically apply. For safety and efficacy considerations know what wavelength is emitted, if ozone emissions are a risk, and investigate other potential safety issues. Shining the sanitizer on a surface may be helpful (if there was enough time to inactivate a pathogen) but it probably wouldn’t do much for pathogens in the air. All in all, without good evidence, it doesn’t seem like a reliable way to decontaminate surfaces or personnel clothing.

Instead, for practical reasons, we would recommend implementation of good standard practices for preventing fomite spread:

  1. Minimize animal handling during routine daily care.
  2. Each animal housing room should have its own cleaning tools and they should not be shared across rooms.
  3. Cover clothing or chang clothing that is used by staff during cleaning time.
  4. Practice handwashing or use of hand sanitizers between animal rooms where possible.

A photocatalytic oxidation purification device (like the Puraclenz) that distributes ions consistantly across the entire area housing animals, including the air and surfaces, may be a better tool to employ in animal housing spaces to reduce the overall load of pathogens rather than trying to use a wand sanitizer.

However, no purifier or UV wand will penetrate into hair and poop and litter particles that get on clothing during cleaning, so staff should change at least tops before moving on the next activity.

We have ionizer options on our air purifiers. would you recommend them to be turned on or off?

There are a number of variables to consider to make that decision. First, look up whether your specific air purifier has been certified to meet low ozone emission standards. If it has not, the health risks from ozone suggest you probably should not.

Second, does the manufacturer have evidence or certifications that the ionizer is effective? What area is the ionizer rated for and how does that compare to the space you are using it in?

Last but not least, what are your goals (i.e. target particles) for your purifier? If you are primarily trying to eliminate dust or larger particles, a good filter (check i’s rating) should be sufficient. If you are also trying to target microbes on particles in the air, and you have investigated the questions about efficacy and safety, then it may add some value to use the ionizer.

What type of cleaning process or system is best to reduce aerosols and keep air quality optimum? I worry that many systems use sprays and foams that create lots of aerosols and create heavy humidity. Are there any tips around cleaning protocols to check the air quality before returning animals to their enclosures? Pressure washers?

Use of spot-cleaning where appropriate will have the greatest impact to help limit the use of water and cleaning products both because less of each will be used and also because spot cleaning does not typically involve spraying large volumes of cleaning agents or water e.g. via hose sprayers. See our Spot Cleaning Dog Kennels info sheet. (/library/resources/spot-cleaning-dog-kennels)

Temporarily increase air movement in the room with floor fans, fans in ceiling areas, etc. during cleaning time periods as this should quicken the drying process. (Reminder – do not place fans such that animals are impacted and experience a draft). Make sure your HVAC system is operating properly so that humid air or air containing lots of aerosolized cleaning products will be replaced by fresh air. Remove as much water in the cleaning process as possible – all wet floors should be squeegeed to a drain. This will also support faster drying of surfaces, which is important as animals should not be moved back into wet housing units.

Placement and use of exhaust fans in dog kennel rooms can sometimes be used to remove air and improve air quality during cleaning time.

Use of pressure washers is likely to create aerosolized water/cleaning products as the high speed of moving liquids will allow more particles to be sheared away from the liquid stream and become suspended in the air. We highly recommend that solids be picked up prior to the cleaning process. If solid waste is not cleaned prior to spraying it is possible to aerosolize the waste – including pathogens like parvo that normally wouldn’t be spread through the air. For lower pressure systems there isn’t much evidence of a difference in aerosol generation for foaming vs droplet spraying systems.

Having temperature, humidity and CO2 monitors in the space will allow you to compare any point in time to the target zones suggested for comfort of people and animals. It is expected that during cleaning time the humidity will rise above the target zone desired – however the overall goal should be that it returns fairly quickly to normal. If there are long periods of the day – hours, that the kennels are wet or the kennel room is very humid – investigate your HVAC system and check to see that it is working properly or if there may be additional tools available to improve air quality. Dehumidification may be warranted if those housing spaces are constantly wet. Where having those monitors isn’t possible just pay attention to how it feels to be in a space – if it feels too hot, too humid, or uncomfortable in another way, that is also useful information that you can use to make decisions.

How to deal with excessive humidity in kennel areas that are climate controlled, yet humidity is still a huge issue?

To some extent the answer to this depends on why humidity is a challenge. Is it an indoor-outdoor dog ward, and the outdoor environment is very humid? Are staff spraying a lot of water during cleaning? Another reason altogether?

If your shelter has not embraced daily spot cleaning (/library/resources/spot-cleaning-dog-kennels) this can make a big difference.

If the population is relatively healthy, using fans to push air into and out of the room can promote drying of the environment, but make sure you aren’t just moving stale, contaminated air around a room-this may contribute to canine respiratory disease.

Placement and use of exhaust fans during cleaning time may be something to explore for a room where the HVAC system is working properly but you’re still having issues with slow drying or high humidity especially after cleaning.

Finally, it is possible that a dehumidifier (associated with the HVAC system or in the ward where humidity is a challenge) may help. This is not likely to be useful (and may be expensive to operate) if the exterior environment is the source of humidity and the ward is open to the exterior. Getting dog doors in addition to guillotine doors can help with maintaining conditioned air and save on costs over the long run.

Should we use fans in kennels and cage rooms and if so when/why/how?

Fans can be helpful to create air movement across a wet surface to assist in drying it. However, they may also contribute to mixing of the air and potentially spreading respiratory pathogens (dogs/people) and other airborne particles.

Sometimes we see fans used to pull air out of rooms – such as an exhaust fan that might be turned on during cleaning time to help remove air quickly. Most of the air pulled into the room will come from other entry points of the room- around doors, etc. There may be some value in getting dryer air into the kennel space.

Fans that simply create air movement do not offer cooling benefits to cats and dogs as they do for humans (air movement causes sweat on our skin to evaporate which is why they help people feel cooler) and should not be relied on for this purpose. If however they help to circulate conditioned air (air that has been heated/cooled/humidity controlled) they may help animals and people feel more comfortable . Monitor any fans in use to ensure they are not directed at housed animals, as drafts can occur, which is undesirable for housed animals.

Are Corsi-Rosenthal DIY box fans helpful in the shelter at improving air quality?

If particulate matter in the air is higher than desired – such as during wild fires, or in urban settings that may deal with more particulate air pollution, then filtering the air can be helpful. Use of MERV 13 filters on HVAC systems (that can support them) is the easiest way to impact the air inside the shelter. If that is not possible or there is a desire to improve air quality in a single room space then portable air filters can be very useful. The box fan filter has been around for years and can be effective for removing particulates when MERV 13 filters are used. The main issue with these DIY units are that they take up a fair bit of space and the fans are generally loud and this can be disruptive and stressful to animals in a room – especially for say a cat housing room. There are many quiet portable HEPA type filter units that can be placed in rooms to help reduce particulates and those may be a better choice than the DIY box fan filter. As with all filters they need to be changed out when recommended to remain effective. This article recently published by UC Davis (February 2025) mentions these fans and when they might provide value.

The tomcats that come in for surgery leave behind a terrible smell. What can we do about this?

First be sure you have thoroughly cleaned any surfaces that may be contributing to a persistent odor. Some cleaning products and disinfectants are better at neutralizing odors. Avoid using strong smelling products just cover up the odor. Replace any surfaces that may be difficult to clean (e.g. wood paneled shelves where cats may have recovered in traps post-surgery).

If the smell is persisting after the cats leave and you are confident in your cleaning efforts, a persistent odor may suggest there is a ventilation problem in the room. Remember you can use an inexpensive CO2 meter to measure CO2 levels as a proxy for ventilation (when there are animals in the room). Check whether an adjustment or modification to the HVAC system may improve ventilation in the room. If not, can fans be used to pass fresher air into the space (and stale air out)? If increased ventilation is not working or possible in the space, a PCO ionizer MIGHT help, as the ions emitted do break down some odor-causing gases.

We didn’t discuss this in our webinar but use of a charcoal filter in an air purifier may additionally help. Look for air purifiers that have an added charcoal filter that can be changed out. These filters do help remove odors but must be replaced pretty frequently. It may be something that would be worth trying in this room – especially if the air is making its way out of the room too. One other thought would be to put an exhaust fan in that room – either on an outside wall or a bathroom type fan that could exhaust out the roof. Turn it on when there are cats in there and off at the end of the day. It wouldn’t address the residual smell directly but would pull air out of that room and keep it from going other places if that is part of the problem.

Original Publish Date: 2/19/2025